The Effects of Paleoclimatic Events on Mediterranean Trout: Preliminary Evidences from Ancient DNA
Identifieur interne : 000028 ( Main/Exploration ); précédent : 000027; suivant : 000029The Effects of Paleoclimatic Events on Mediterranean Trout: Preliminary Evidences from Ancient DNA
Auteurs : Andrea Splendiani [Italie] ; Tatiana Fioravanti [Italie] ; Massimo Giovannotti [Italie] ; Alessandra Negri [Italie] ; Paolo Ruggeri [Italie] ; Luigi Olivieri [Italie] ; Paola Nisi Cerioni [Italie] ; Massimo Lorenzoni [Italie] ; Vincenzo Caputo Barucchi [Italie]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
In this pilot study for the first time, ancient DNA has been extracted from bone remains of
Url:
DOI: 10.1371/journal.pone.0157975
PubMed: 27331397
PubMed Central: 4917132
Affiliations:
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Le document en format XML
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Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona</wicri:regionArea><wicri:noRegion>60131 Ancona</wicri:noRegion></affiliation></author><author><name sortKey="Fioravanti, Tatiana" sort="Fioravanti, Tatiana" uniqKey="Fioravanti T" first="Tatiana" last="Fioravanti">Tatiana Fioravanti</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona</wicri:regionArea><wicri:noRegion>60131 Ancona</wicri:noRegion></affiliation></author><author><name sortKey="Giovannotti, Massimo" sort="Giovannotti, Massimo" uniqKey="Giovannotti M" first="Massimo" last="Giovannotti">Massimo Giovannotti</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona</wicri:regionArea><wicri:noRegion>60131 Ancona</wicri:noRegion></affiliation></author><author><name sortKey="Negri, Alessandra" sort="Negri, Alessandra" uniqKey="Negri A" first="Alessandra" last="Negri">Alessandra Negri</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona</wicri:regionArea><wicri:noRegion>60131 Ancona</wicri:noRegion></affiliation></author><author><name sortKey="Ruggeri, Paolo" sort="Ruggeri, Paolo" uniqKey="Ruggeri P" first="Paolo" last="Ruggeri">Paolo Ruggeri</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona</wicri:regionArea><wicri:noRegion>60131 Ancona</wicri:noRegion></affiliation></author><author><name sortKey="Olivieri, Luigi" sort="Olivieri, Luigi" uniqKey="Olivieri L" first="Luigi" last="Olivieri">Luigi Olivieri</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona</wicri:regionArea><wicri:noRegion>60131 Ancona</wicri:noRegion></affiliation></author><author><name sortKey="Nisi Cerioni, Paola" sort="Nisi Cerioni, Paola" uniqKey="Nisi Cerioni P" first="Paola" last="Nisi Cerioni">Paola Nisi Cerioni</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona</wicri:regionArea><wicri:noRegion>60131 Ancona</wicri:noRegion></affiliation></author><author><name sortKey="Lorenzoni, Massimo" sort="Lorenzoni, Massimo" uniqKey="Lorenzoni M" first="Massimo" last="Lorenzoni">Massimo Lorenzoni</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, Via Elce di Sotto, 06123 Perugia, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, Via Elce di Sotto, 06123 Perugia</wicri:regionArea><wicri:noRegion>06123 Perugia</wicri:noRegion></affiliation></author><author><name sortKey="Caputo Barucchi, Vincenzo" sort="Caputo Barucchi, Vincenzo" uniqKey="Caputo Barucchi V" first="Vincenzo" last="Caputo Barucchi">Vincenzo Caputo Barucchi</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Dipartimento di Scienze della Vita e dell'Ambiente (DiSVA), Università Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona</wicri:regionArea><wicri:noRegion>60131 Ancona</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Istituto Italiano di Paleontologia Umana, Is.I.P.U., Convitto Nazionale Regina Margherita, Piazza Ruggero Bonghi 2. 03012 Anagni, Italy</addr-line></nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Istituto Italiano di Paleontologia Umana, Is.I.P.U., Convitto Nazionale Regina Margherita, Piazza Ruggero Bonghi 2. 03012 Anagni</wicri:regionArea><wicri:noRegion>Piazza Ruggero Bonghi 2. 03012 Anagni</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>In this pilot study for the first time, ancient DNA has been extracted from bone remains of <italic>Salmo trutta</italic>. These samples were from a stratigraphic succession located in a coastal cave of Calabria (southern Italy) inhabited by humans from upper Palaeolithic to historical times. Seven pairs of primers were used to PCR-amplify and sequence from 128 to 410 bp of the mtDNA control region of eleven samples. Three haplotypes were observed: two (ADcs-1 and MEcs-1) already described in rivers from the Italian peninsula; one (ATcs-33) belonging to the southern Atlantic clade of the AT <italic>Salmo trutta</italic> mtDNA lineage (<italic>sensu</italic> Bernatchez). The prehistoric occurrence of this latter haplotype in the water courses of the Italian peninsula has been detected for the first time in this study. Finally, we observed a correspondence between frequency of trout remains and variation in haplotype diversity that we related with ecological and demographic changes resulting from a period of rapid cooling known as the Younger Dryas.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Cohen, K" uniqKey="Cohen K">K Cohen</name></author><author><name sortKey="Finney, S" uniqKey="Finney S">S Finney</name></author><author><name sortKey="Gibbard, P" uniqKey="Gibbard P">P Gibbard</name></author><author><name sortKey="Fan, J" uniqKey="Fan J">J Fan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hewitt, Gm" uniqKey="Hewitt G">GM Hewitt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hewitt, Gm" uniqKey="Hewitt G">GM Hewitt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Bruyn, M" uniqKey="De Bruyn M">M de 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uniqKey="Pletterbauer F">F Pletterbauer</name></author><author><name sortKey="Tisseuil, C" uniqKey="Tisseuil C">C Tisseuil</name></author><author><name sortKey="Wever, A" uniqKey="Wever A">A Wever</name></author><author><name sortKey="Schmutz, S" uniqKey="Schmutz S">S Schmutz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blanchet, S" uniqKey="Blanchet S">S Blanchet</name></author><author><name sortKey="Dubut, V" uniqKey="Dubut V">V Dubut</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Italie</li></country></list><tree><country name="Italie"><noRegion><name sortKey="Splendiani, Andrea" sort="Splendiani, Andrea" uniqKey="Splendiani A" first="Andrea" last="Splendiani">Andrea Splendiani</name></noRegion><name sortKey="Caputo Barucchi, Vincenzo" sort="Caputo Barucchi, Vincenzo" uniqKey="Caputo Barucchi V" first="Vincenzo" last="Caputo Barucchi">Vincenzo Caputo Barucchi</name><name sortKey="Caputo Barucchi, Vincenzo" sort="Caputo Barucchi, Vincenzo" uniqKey="Caputo Barucchi V" first="Vincenzo" last="Caputo Barucchi">Vincenzo Caputo Barucchi</name><name sortKey="Fioravanti, Tatiana" sort="Fioravanti, Tatiana" uniqKey="Fioravanti T" first="Tatiana" last="Fioravanti">Tatiana Fioravanti</name><name sortKey="Giovannotti, Massimo" sort="Giovannotti, Massimo" uniqKey="Giovannotti M" first="Massimo" last="Giovannotti">Massimo Giovannotti</name><name sortKey="Lorenzoni, Massimo" sort="Lorenzoni, Massimo" uniqKey="Lorenzoni M" first="Massimo" last="Lorenzoni">Massimo Lorenzoni</name><name sortKey="Negri, Alessandra" sort="Negri, Alessandra" uniqKey="Negri A" first="Alessandra" last="Negri">Alessandra Negri</name><name sortKey="Nisi Cerioni, Paola" sort="Nisi Cerioni, Paola" uniqKey="Nisi Cerioni P" first="Paola" last="Nisi Cerioni">Paola Nisi Cerioni</name><name sortKey="Olivieri, Luigi" sort="Olivieri, Luigi" uniqKey="Olivieri L" first="Luigi" last="Olivieri">Luigi Olivieri</name><name 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